For some of the most interesting disputes between theology and modern science, I recommend the series of articles entitled Faith and Reason, inspired by the TV programme with the same name. You will be introduced to the religious or non-religious points of view of a number of scientists on subjects like God, the beginning of the universe, the rules of quantum physics, the purpose and meaning of our existence, etc.
The ultimate question remains the same: Is there a conflict between science and religion or do they secretly support each other? Will the long-expected and well-acclaimed `theory of everything` solve this mystery or will it pose even more questions? Are science and religion two different ways of trying to explain the unexplainable? Is quantum physics a peep into God's secret laboratory? And if it is, how much more will The Creator of the universe allow us to know?